Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs1199955 chr13:37648464 A/G 0.000351 176 4.17 24.47 25.87 KM Plot
PCPG rs1199956 chr13:37650515 A/G 0.000357 176 4.17 20.2 25.92 KM Plot
PCPG rs1199962 chr13:37633824 T/C 0.000355 176 4.17 24.23 25.92 KM Plot
PCPG rs1199963 chr13:37633525 T/G 0.000355 176 4.17 24.23 25.92 KM Plot
PCPG rs1199966 chr13:37630927 T/C 0.000308 178 4.17 24.23 25.92 KM Plot
PCPG rs1199968 chr13:37630082 T/C 0.000308 178 4.17 24.23 25.92 KM Plot
PCPG rs1199972 chr13:37627517 T/G 0.000308 178 4.17 24.23 25.92 KM Plot
PCPG rs1199974 chr13:37625459 C/T 0.000308 178 4.17 24.23 25.92 KM Plot
PCPG rs1199979 chr13:37660392 T/C 0.000378 175 4.17 24.23 25.87 KM Plot
PCPG rs1199981 chr13:37620225 T/A 0.000294 178 4.17 24.7 25.7 KM Plot
PCPG rs1199982 chr13:37621367 C/T 0.000308 178 4.17 24.23 25.92 KM Plot
PCPG rs1199983 chr13:37621528 A/G 0.000308 178 4.17 24.23 25.92 KM Plot
PCPG rs1199984 chr13:37645615 G/A 0.00034 176 4.17 22.22 25.97 KM Plot
PCPG rs1199986 chr13:37643763 T/C 0.000355 176 4.17 24.23 25.92 KM Plot
PCPG rs1199987 chr13:37643745 A/C 0.000355 176 4.17 24.23 25.92 KM Plot